An object of class Seurat 35687 features across 11553 samples within 2 assays Active assay: SCT (15863 features) 1 other assay present: RNA 3 dimensional reductions calculated: pca, umap, tsne
The Seurat object was generated with Seurat 3.1.4.
Downsampled to 1000 cells.
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-apple-darwin18.7.0 (64-bit)
## Running under: macOS Mojave 10.14.6
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /usr/local/Cellar/openblas/0.3.9/lib/libopenblasp-r0.3.9.dylib
##
## locale:
## [1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Seurat_3.1.0 plotly_4.9.2.1 knitr_1.28 dplyr_0.8.5 ggplot2_3.3.0 rmarkdown_2.1
##
## loaded via a namespace (and not attached):
## [1] tsne_0.1-3 nlme_3.1-147 RcppAnnoy_0.0.16 RColorBrewer_1.1-2 httr_1.4.1 numDeriv_2016.8-1.1
## [7] sctransform_0.2.1 tools_3.6.3 R6_2.4.1 irlba_2.3.3 KernSmooth_2.23-17 uwot_0.1.8
## [13] BiocGenerics_0.30.0 lazyeval_0.2.2 colorspace_1.4-1 sn_1.6-1 npsurv_0.4-0.1 withr_2.2.0
## [19] gridExtra_2.3 tidyselect_1.0.0 mnormt_1.5-7 compiler_3.6.3 Biobase_2.44.0 TFisher_0.2.0
## [25] sandwich_2.5-1 labeling_0.3 scales_1.1.0 lmtest_0.9-37 mvtnorm_1.1-0 pbapply_1.4-2
## [31] ggridges_0.5.2 stringr_1.4.0 digest_0.6.25 R.utils_2.9.2 pkgconfig_2.0.3 htmltools_0.4.0
## [37] bibtex_0.4.2.2 plotrix_3.7-8 htmlwidgets_1.5.1 rlang_0.4.6 farver_2.0.3 zoo_1.8-8
## [43] jsonlite_1.6.1 crosstalk_1.1.0.1 ica_1.0-2 R.oo_1.23.0 magrittr_1.5 Matrix_1.2-18
## [49] Rcpp_1.0.4.6 munsell_0.5.0 ape_5.3 reticulate_1.15 lifecycle_0.2.0 R.methodsS3_1.8.0
## [55] multcomp_1.4-13 stringi_1.4.6 yaml_2.2.1 gbRd_0.4-11 MASS_7.3-51.6 Rtsne_0.15
## [61] plyr_1.8.6 grid_3.6.3 parallel_3.6.3 listenv_0.8.0 ggrepel_0.8.2 crayon_1.3.4
## [67] lattice_0.20-41 cowplot_1.0.0 splines_3.6.3 multtest_2.40.0 SDMTools_1.1-221.2 pillar_1.4.4
## [73] igraph_1.2.5 reshape2_1.4.4 future.apply_1.5.0 codetools_0.2-16 stats4_3.6.3 leiden_0.3.3
## [79] mutoss_0.1-12 glue_1.4.0 evaluate_0.14 lsei_1.2-0.1 metap_1.3 data.table_1.12.8
## [85] png_0.1-7 vctrs_0.2.4 Rdpack_0.11-1 gtable_0.3.0 RANN_2.6.1 purrr_0.3.4
## [91] tidyr_1.0.3 future_1.17.0 assertthat_0.2.1 xfun_0.13 rsvd_1.0.3 survival_3.1-12
## [97] viridisLite_0.3.0 tibble_3.0.1 cluster_2.1.0 globals_0.12.5 TH.data_1.0-10 fitdistrplus_1.0-14
## [103] ellipsis_0.3.0 ROCR_1.0-11